Data Files

• BIS180L_Class_Data_2019 BIS180L_Class_Data_2019 [ BIS180L_Class_Data_2019.tar.gz, 121.8 MB ]

  Class data for BIS180L Spring 2019

• BIS180L_Class_Data_2020 BIS180L_Class_Data_2020 [ bis180l_class_data_2020.tar.gz, 121.9 MB ]

• Novel de novo Tomato Contigs Novel de novo Tomato Contigs [ novel_de_novo_contigs.fa, 35.5 KB ]

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• S. Lycopersicum Matched CDS (ITAG2.3) S. Lycopersicum Matched CDS (ITAG2.3) [ Slyc_Matched_CDS_ITAG2.3.fa, 31.3 MB ]

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• S. Lycopersicum Upstream Sequences S. Lycopersicum Upstream Sequences [ Slyc_Upstream1000.fa, 34.5 MB ]

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• S. Pennellii Matched CDS (ITAG2.3) S. Pennellii Matched CDS (ITAG2.3) [ Spen_Matched_CDS_ITAG2.3.fa, 32.0 MB ]

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• S. Pennellii Upstream Sequences for IL43 S. Pennellii Upstream Sequences for IL43 [ Spen_Upstream1000_IL43.fa, 733.8 KB ]

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• tie-1 differentially expressed genes tie-1 differentially expressed genes [ tieDEfinal.annotated.HRD.csv, 2.9 MB ]

  edgeR analysis of genes differentially expressed in tie-1 mutants vs wild-type.

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• Tomato Polymorphisms (Koenig 2013 PNAS) Tomato Polymorphisms (Koenig 2013 PNAS) [ Dataset_S1.Polymorphisms.zip, 36.0 MB ]

  SNPs and INDELs for six tomato species. These polymorphisms were identified in Koenig, et al.'s 2013 PNAS paper. Detailed information about the contents of this compressed file are contained within the included 'readme.txt'.
  
  This file contains four tables:
  
  

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• Tomato-Potato Alignments Tomato-Potato Alignments [ tomato_potato_alignments.tar.gz, 6.7 MB ]

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